Page Comparison

...

The Snapshot module features the following sections:

Section 1: Initiative Activity

This section shows a summary of each each initiative as it has generated data through the years—more specifically, it shows how much of the generated data is available to the public, versus how much has private or restricted access.

...

You can hover over any of the colored blocks of the bar plot to see the actual count of files (see screenshots below).

...

Section 2: Resources Generated

This section provides an overview of the various data types generated by year, suggesting the nature of experiments that studies have focused on in a particular year or funding cycle. The plot is ordered such that the data type with the highest number of files in the most recent year will surface to the top of the list. You can hover over any of the colored blocks of the bars corresponding to each data type to see which studies contributed to that data type.

Section 3: File Upload Timeline

This section provides an overview of file upload activity of individual studies in specific funding initiatives over time during their funding period.

...

The Publications module features the following sections:

Section 1: Publication Status

This visualization displays the number of publications per year. If you hover over any of the colored block

s of the plot, you can see how many publications there were for that study in that year, and the name of the studies that contributed to the publications in that year.

Section 2: Publication Status by Disease Manifestation

This visualization displays the number of publications per year, by disease manifestation rather than by study. You can hover over any of the colored blocks in the plot to see more details. You can also click Download Plot Data to download the counts for each disease manifestation in each year.

...

The Participating Studies module features the following sections:

Section 1: Participating Studies

This section, in the form of a table, provides relevant details on all studies in an initiative. Notice how you can reorder the table by a specific category by clicking on a column of interest. By default, the displays all studies from all initiatives that your organization has funded. Use the Select an initiative dropdown to select a specific initiative to display only those initiative’s studies in the table. You can also use the search box in the top right to search for your favorite study using the study name or name of the leads.

...

Section 2: Study Summary

This table is a simple summary of the selected study. You can actually click on the synID listed next to Unique Study Id to go directly the study in Synapse.

Section 3: Study Timeline

If there has been any upload or annotation activity in this study’s Synapse project space, that progress will be reflected in this visualization. You can see the number of files uploaded each month, per Resource Type (analysis, experimental data, or report).

Section 4: Data Focus

These plots feature the total number of data files present in this study based on various data focuses of this study: assays used, resources added, species used, and tumor types investigated. You can hover over any of the colored sections in each bar plot to see more details.

Section 5: Annotation Activity

These plots tell you whether the uploaded data files in this study have been annotated or not, i.e., whether metadata labels such as assay, specimenID, etc., have been added to the uploaded files.

...

You can hover over any of the colored sections in each bar plot to see more details.

Section 6: Publication Status

If this study has associated publications, then this visualization displays the number of publications by year. Hover over any of the colored sections in any plot to see more details.

Section 7: Milestone or Progress Report tracker

As mentioned in the app, these series of plots track the expected and actual data uploads to this study associated with each progress or milestone report. Visualizations will only appear if the study has current milestones or progress report updates. To populate the visualization, you need to select a parameter (either Data Type or File Format) from the dropdown menu under Choose parameter to visualize.

Section 7a: Researcher reported progress/milestone update

This section tracks the files uploaded by researchers that they have labeled as being a part of a specific milestone or progress report period.

...

Hover over any of the colored sections in any plot to see more details.

Section 7b: Sage internal milestone or progress report tracking

There is a chance that the researchers may have forgotten to add the milestone/progress report number to newly uploaded files. Or, it’s possible that there may be a typo in the entered value that doesn't match the right milestone.

...

This module provides a summary of new file submissions, which you can filter by number of days. It has one section that presents the information in a table.

Section 1: New Files

This table shows a summary of all new files uploaded with the last N days. The information displayed in the table is automatically displayed in the visualization below (Section 2: New Submissions Plot).

...

You can use the Show N entries dropdown to change the number of entries that displays on the page (this does not affect the visualization plot, only the table view).

Section 2: New Submissions Plot

This plot is a visualization of the information displayed in the table above. It displays the number of files uploaded per study, as well as a breakdown of annotations for those uploaded files.

...