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Snapshot: This module provides a bird's eye view of your organization's funding structure portfolio and activity in the funded studies year over year.
Publications: This module is focused on longitudinal tracking of the publications associated with the studies funded through your organization.
Participating Studies: This module provides focused information about individual studies/projects with a high level of granularity ranging from tracking the annotation status of uploaded files to tracking of upload activity as it relates to the study's expected milestones.
New Submissions: This module provides a list and visualization of all newly uploaded files within the last n number of days (you can pick the window of time).
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This module is designed to provide you with an overview, in terms of numbers, of the organization’s current recent and past publications from a specific project in your funding portfolio.
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Please note that you can see more details of the plot by zooming in, isolating specific access types, and more. See the section how to use the bar plots below for instructions on how to make the most of these bar plots and get the information you need. |
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s of the plot, you can see how many publications there were for that study in that year, as well as and the name of each studythe studies that contributed to the publications in that year.
Section 2: Publication Status by Disease Manifestation
This visualization displays the number of publications per year, by disease manifestation rather than by study. You can hover over any of the colored blocks in the plot to see a more detailed countmore details. You can also click Download Plot Data to download the counts for each disease manifestation in each year.
Participating Studies module
This module provides an overview of a granular view into each of the participating studies in your funding portfolio, which you can filter by initiative, followed by several relevant visualizations to reflect your selected initiative.
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This section, in the form of a table, provides relevant details on all studies in an initiative. Notice how you can reorder the table by a specific category by clicking on a column of interest. By default, the displays all studies from all initiatives that your organization has funded. Use the Select an initiative dropdown to select a specific initiative to display only those initiative’s studies in the table. You can also use the search tool box in the top right to search for your favorite study using the study name or name of the leads.
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Section 3: Study Timeline
If there has been progress completed already on this study, the any upload or annotation activity in this study’s Synapse project space, that progress will be reflected in this visualization. You can see the number of files uploaded each month, per Resource Type (analysis, experimental data, or report).
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These plots tell you whether the uploaded data files in the this study have been annotated or not. Annotators will be named on the left side of the plots. , i.e., whether metadata labels such as assay, specimenID, etc., have been added to the uploaded files.
In the current plot, we consider any data files that originated from a scientific experiment, but do not have a value in the Assay column, to be Not Annotated.
You can hover over any of the colored sections in each bar plot to see more details.
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Section 7a: Researcher reported progress/milestone update
This section tracks the files uploaded by researchers that they have labeled as being a part of a specific milestone or progress report period.
In this section, you can use the Choose Milestone or Progress Report Number dropdown menu to select a specific milestone or progress report that you want to visualize. The resulting graph will show the expected data files compared to the actual data files that have been uploaded for the study in the chosen milestone or progress report.
Hover over any of the colored sections in any plot to see more details.
Section 7b: Sage internal milestone or progress report tracking
This section is designed to assess the expected data files compared to the actual data files that have been uploaded for this study, based on Sage’s internal milestone or report tracking. There is a chance that the researchers may have forgotten to add the milestone/progress report number to newly uploaded files. Or, it’s possible that there may be a typo in the entered value that doesn't match the right milestone.
To help scan for these potential inaccuracies, this section provides an independent internal audit of all files in a researcher’s study space within a customizable time window (for example, within a few days or months of an upcoming milestone deadline).
Click on a row in the table below to select the milestone or progress report number of interest. Then, use the slider on the right to determine a time window around the estimated date of upload to find all files uploaded during this window. The resulting data will appear in the plots below. Hover over any of the colored sections in any plot to see more details.
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This table shows a summary of all new files uploaded with the last N days. The information displayed in the table is automatically displayed in the visualization below (Section 2: New Submissions Plot).
By default, the table shows the files uploaded within the last 60 days. To see files in a longer or shorter time window, type in a custom number under Display files uploaded within the last N days. Changing this number will automatically update the information displayed in the visualization below.
You can use the Show N entries dropdown to change the number of entries that displays on the page (this does not affect the visualization plot, only the table view).
Section 2: New Submissions Plot
This plot is a visualization of the information displayed in the table above. It displays the number of files uploaded per study, as well as a breakdown of annotations for those uploaded files.
Hover over any of the colored sections in the plot to see more details.
How to use the bar plots
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