ProjectLive is designed to help you track the progress of initiatives funded by your organization. It consolidates high-level information about each study present on the NF Data Portal through simple visualizations. The information available in the app includes yearly or monthly daily tracking of the upload and annotation of data files generated in these studies.
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The visualizations provided throughout this app will give you summary-level information related to all the studies in your organization’s funding portfolio. Are you hoping to access and download the actual files and data contained within each of these studies? You can do so back to in the NF Data Portal. And you can find instructions on navigating the NF Data Portal and finding data of interest throughout the rest of our documentation site.
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Snapshot: This module provides a bird's eye view of your organization's funding structure and activity in the funded studies year over year.
Publications: This module is focused on longitudinal tracking of the publications associated with the studies funded through an your organization.
Participating Studies: This module provides focused information about individual studies with a high level of granularity ranging from tracking the annotation status of uploaded files to tracking of upload activity as it relates to the study's expected milestones.
New Submissions: This module provides a list of all newly uploaded files within the last n number of days (you can pick the window of time).
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Go to the NF Data Portal and make sure you’re signed in
Click on the Organizations tab in the top menu, and select your organization from the dropdown list
Click Funding Impact in the table of contents on the left (see screenshot below) or simply scroll to the bottom of the page
Under Funding Impact, click View Dashboard—this will direct you to the app*
*Note: Only select admin personnel from your organization have access to this application.
If you think you should have access to projectLIVE, please contact us or the admin group in your organization working with Sage Bionetworks.
The ProjectLIVE app features four modules: Snapshot, Publications, Participating Studies, and New Submissions, which you can toggle between using the menu at the top.
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The Snapshot module features the following sections:
Section 1: Initiative Activity
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This visualization section shows a summary of each each initiative as it has generated data through the years—more specifically, it shows how much of the generated data is available to the public, versus how much has private or restricted access.
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You can hover over any of the colored slices blocks of the bar plot to see the actual count of files (see screenshot screenshots below).
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Section 2: Resources Generated
This visualization section provides an overview of the various data types generated by year, suggesting the nature of experiments that studies have focused on in a particular year or funding cycle. The plot is ordered such that the data type with the highest number of files in the most recent year will surface to the top of the list. You can hover over any of the colored slices blocks of the bars corresponding to each data type to see which studies contributed to that data type.
Section 3: File Upload Timeline
This visualization section provides an overview of file upload activity of individual studies in specific funding initiatives over time during their funding period.
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You can hover over the colored slices blocks of the bar plot to view the total number of files for that specific resource uploaded in the particular study.
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The Publications module features the following sections:
Section 1: Publication Status
This visualization displays the number of publications per year, per study. If you hover over any of the colored slices block
s of the plot, you can see how many publications there were for that study in that year, as well as the name of each study.
Section 2: Publication Status by Disease Manifestation
This visualization displays the number of publications per year, by disease manifestation rather than by study. You can hover over any of the colored slices blocks in the plot to see a more detailed count.
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The Participating Studies module features the following sections:
Section 1: Participating Studies
This visualizationsection, in the form of a table, provides relevant details on all publications studies in an initiative. Notice how you can reorder the table by a specific category by clicking on a column of interest. By default, the displays all studies from all initiatives that your organization has funded. Use the Select an initiative dropdown to select a specific initiative to display only those initiative’s studies in the table. You can also use the search tool in the top right to search for your favorite study using the study name or name of the leads.
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In order to populate the rest of the visualizations in this module, you need to click on a specific study within the table. |
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Section 2: Study Summary
This table is a simple summary of the selected study. You can actually click on the synID listed next to Unique Study Id to access go directly the study in Synapse.
Section 3: Study Timeline
If there has been progress completed already on this study, the progress will be reflected in this visualization. You can see the number of files uploaded each month, per Resource Type (analysis, experimental data, or report).
Section 4: Data Focus
These plots feature total numbers the total number of data files present in this study based on various data focuses of this study: assays used, resources added, species used, and tumor types investigated. You can hover over any of the colored sections in each bar plot to see more details.
Section 5: Annotation Activity
Need some help with this one
Section 6: Publication Status
If this study has associated publications, then this visualization displays the number of publications by year. Hover over any of the colored sections in any plot to see more details.
Section 7: Milestone or Progress Report tracker
As mentioned in the app, these series of plots track the expected and actual data uploads to this study associated with each progress or milestone report. Visualizations will only appear if the study has current milestones or progress report updates. To populate the visualization, you need to select a parameter (either Data Type or File Format) from the dropdown menu under Choose parameter to visualize.
Section 7a: Researcher reported progress/milestone update
Section 7b: Sage internal milestone or progress report tracking
New Submissions module
This module provides a summary of new file submissions, which you can filter by number of days. It has one section that presents the information in a table.
Section 1: New Files
This table shows a summary of all new files uploaded with the last N days. By default, the table shows the files uploaded within the last 60 days. To change thissee files in a longer or shorter time window, type in a custom number under Display files uploaded within the last N days. You can use the Show N entries dropdown to change the number of entries that displays on the page.
How to use the bar plots
The many plot graphs that you can find All the bar plots in various visualizations/section throughout the app all function in essentially the same way function in essentially the same way.
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You can also click Download plot table at the top left corner of any plot to download a .csv file of the plot table data (data only)data which can be opened using Excel.
How to find a specific piece of information
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