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Data Type | Method | Output | Tried yet? |
|---|---|---|---|
RNA-Seq | Salmon | Yes | |
bam/cram to fastq conversion
When fastq files are not available, cram/bam files are converted to fastq using this pipeline: https://github.com/qbic-pipelines/bamtofastq (v1.2.0).
WES and WGS Variant Calling (SNV & INDEL)
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