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Raw fastq files uploaded to Synapse by researcher in a folder with name format
experimentexperiment_name_rnaseq_fastq_date. No white space should be present in the filenames (all filenames should have_for whitespaces.All experiment and sample related annotations need to be added on Synapse before processing can start. This is a required step so that a sample sheet can be generated to trigger the processing workflow
The sample sheet should contain the following information in the following format (saved as a
.txtfile) :
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