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Email richard.yaxley@sagebase.org withi with the subject:
MODEL-AD Data - Grant:<number>- Grant# - Data Contribution
Submit the Data Contribution form with the following information:
Grant Number
Contact PIs
Study Name (see naming conventions below)
Experimental models used
Assays performed
Data file formatsFormats
Number of individuals and biospecimens collected
Study Organization
File Structure
Studies are organized in Synapse with a directory schema similar to this:
Study_Name/
Data/
Assay_a/
Assay_b/
Metadata/
Staging/
(Note: Files will initially be uploaded to staging locations)Assay_*/
File naming
File names should be concise, descriptive, and unique across the entire study. We must be able to distinguish between each file as if there were all in one directory.
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Study Name Conventions
MODEL-AD study names should be formatted as follows.
Study type | Naming Format | Number of Strains |
Primary Screen |
| Many |
Strain Validation |
| Many |
Deep Phenotyping |
| Many |
Pharmacokinetic |
| One |
Pilot Studies
|
Examples:
| Many |
Study Organization
File Structure
Studies are organized in Synapse with a directory schema similar to this:
Study_Name/
Data/
Assay_a/
Assay_b/
Metadata/
Staging/
(Note: Files will initially be uploaded to staging locations)Assay_*/
File naming
File names should be concise, descriptive, and unique across the entire study. We must be able to distinguish between each file as if there were all in one directory.
See general file naming recommendations from the Princeton U Library.
Study Documentation
Each study will need a Study Description, Methods Description, and Acknowledgment Statement. The Documentation Submission Form includes some templates for these documents and instructions about submitting the documents.
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Methods Description
Each assay should be include a brief description about of the procedures, data collection, and analytical methods. This is a good opportunity to provide useful details that may not be included in the manuscript.
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Acknowledgment Statement
Every MODEL-AD study should include the following acknowledgment:
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