Each template should also include a Data Dictionary with a list of each key-definition pair. Each data template should have a brief Assay description (3-5 sentences) about data collection.
See all the available data templates
MODEL-AD Data Templates
Explore all Data Templates
Assay | Data Template |
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| 1 | Behavioral Process |
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Behavioral – Open field
Behavioral – Rotarod
Behavioral – Spontaneous Alternation
| 2 | Gene Expression |
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Metadata Nanostring metadata template
Gene Expression – RNAseq
Provide FASTQ files and counts. Do not include BAM files.
Metadata RNAseq metadata template
Clinical – Blood chemistry measurement
Immunoassay – Electrochemiluminescence
Immunoassay – Immunofluorescence
Electrophysiology – LTP
Imaging – Autorad
Metadata Autorad metadata template
Imaging – MRI
Metadata MRI metadata templat
Imaging – PET
Metadata PET metadata template
Pharmacokinetic Study
| ||
| 3 | Immunoassay | |
|---|---|---|
| 4 | Long-term Potentiation | |
| 5 | Imaging | |
| 6 | Pharmacokinetic Study |
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MODEL-AD Data Collection across Sites
JAX | IU | PITT | UCI | ||
DMP | DMP | PTC | PTC | DMP | |
Data Transfer
This section describes how MODEL-AD teams should contribute data to the DCC. In our onboarding call, we will review how MODEL-AD content is organized in the portal. It is important we all understand clearly what content will be transferred (data type, file format, file naming, number of files).
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