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To register these schemas in Synapse use the register-schemas.R script.

Procedure

1. Navigate to terms/modules/ directory

2. MODEL-AD terms currently reside in synapseAnnotations/terms/neuro

Q: Ask Kelsey about creating a MODEL-AD/ directory for those specific terms

Term information is stored in JSON schemas in the https://github.com/Sage-Bionetworks/synapseAnnotations/tree/master/terms directory.

• NOTE: Terms specific to MODEL-AD are stored here: synapseAnnotations/terms/neuro

3. Create or Edit an existing JSON schema file.

4. Copy and Paste schema informationtemplate.

5. Edit $id line with Modulename and Key name.

6. Version number should numbers start with 0.0.1 and need to be increased by one incremented with each update.

7. Add new term, a brief definition, and an ontology citation , for the included definition.

8. Create a branch structured name formatted like : ‘username-edit-type/‘

9. Add a brief description of changes you want to commit

10. Request Reviewers

11. Data checks will start to run in the background.

12. Initiate a Pull Request and select reviewers

13. Once the changes have been merged into master, need to run the XYZ script to update the metadata dictionary with the revised latest version of terms in synapseAnnotations.

Synapse Table of Metadata Terms: Link

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