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  1. If needed, install R from http://cran.r-project.org/

  2. From the R command prompt, install the following packages:

    Code Block
    source('http://depot.sagebase.org/CRAN.R')
pkgInstall("synapseClient")

    At a later date, we anticipate that this package will be available via Bioconductor or CRAN

  3. NOTE: If you are running OSX, you will need to install tcl/tk for all of the client features to work properly. You can find the installer here: http://cran.r-project.org/bin/macosx/tools/tcltk-8.5.5-x11.dmg

  4. NOTE: the "zip" command must be executable from your OS's command interpreter. If you see an error like the following, you can resolve the issue by following these instructions: How to install zip on WindowsInstalling Zip

    Code Block
    Error in owner@fileCache$createArchive() :
  Archive could not be created because it contains multiple files yet the system does not have zip installed.

     

  5. If anything goes wrong see Troubleshooting Installation Problems

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