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Uploading data involves the following actions, to be completed in order:
1. Ensure your account is certified
If your account is certified, there will be an icon indicating so on your profile page. If it is not yet certified, see Step 1 in How to Share Data (an Overview) for instructions.
2. Locate your Synapse project
In order to upload data, you need to have a designated Synapse project, which will be provided to you once you register your project with the NF-OSI coordinators. If you haven’t registered your project yet, see How to Share Data (an Overview) for more information and instructions on how to do this.
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Log into Synapse.org
Click on your profile picture in the upper right hand corner and click Projects
Click on your project—the project title should match the information you provided the NF-OSI coordinators when you registered your project
3. Create a folder for your data
Once you’re in your project, click on Files, and then click the Data or Raw Data folder.
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You can find more information on Synapse projects, files, and folders on the Synapse docs site.
4. Upload your data
Now that you have an appropriate folder to house your data, you’re ready to upload. You can do this using the Synapse.org UI or by using one of our programmatic clients—Python, R, or command-line. For small folders/files, the website upload is generally easiest. For larger uploads (large files or many files), we recommend using the programmatic clients.
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If you have any questions about whether your repository of choice is compatible with this, please reach out to us (nf-osi@sagebionetworks.org). |
6. Annotate your data
Once your dataset is uploaded, you must annotate it in order to make it findable and understandable. You can find those instructions at How to Annotate Data.
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