Versions Compared

Old Version 1

changes.mady.by.user Rich Yaxley

Saved on

compared with

New Version 2

changes.mady.by.user Rich Yaxley

Saved on

Key

  • This line was added.
  • This line was removed.
  • Formatting was changed.
Table of Contents

Study Naming

MODEL-AD data and metadata are organized by site and study. Studies are divided into subfolders by assay type, plus a subfolder for all study metadata and a staging folder for data that has not yet been released. 

Study type

How many strains?

Naming convention

Example names

Primary screen

Many

Site_PrimaryScreen

  • Jax.IU.Pitt_PrimaryScreen

  • UCI_PrimaryScreen

Strain validation

Many

Site_StrainValidation

  • Jax.IU.Pitt_StrainValidation

  • UCI_StrainValidation

Deep phenotyping

One

Site_Strain

  • Jax.IU.Pitt_APOE4_Trem2

  • UCI_5XFAD

PK

One

Site_Strain_Drug

  • Jax.IU.Pitt_5XFAD_Verubecestat

Study Documentation

Study Description

Each study should be accompanied by a brief study description that includes the species, genetic background, a link to the Jax Datasheet (if available) or a description of how the animals were created.

Assay Description

Each assay should be accompanied by a short description that includes specimen processing, data generation, and data processing, as applicable – something akin to the Materials and Methods section of a manuscript.

These descriptions can be submitted via the Data Validator by selecting the ‘Documentation’ tab on the left side of the window.  At present, you can’t see files after you’ve uploaded them.  The data curation team will always look at file versions and date/time stamps and take the most recent version of the file, so if in doubt, please feel free to upload a new version.