R: segfault on R 3.0.1

Description

This is likely a configuration issue on my own machine. Just tracking progress and documenting, in case someone else runs into the same problem.

1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 > sessionInfo() R version 3.0.1 (2013-05-16) Platform: x86_64-apple-darwin11.4.2 (64-bit) locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] synapseClient_0.30-1 loaded via a namespace (and not attached): [1] affy_1.38.1 affyio_1.28.0 Biobase_2.20.1 [4] BiocGenerics_0.6.0 BiocInstaller_1.10.3 digest_0.6.3 [7] parallel_3.0.1 preprocessCore_1.22.0 RCurl_1.95-4.1 [10] RJSONIO_1.0-3 tools_3.0.1 zlibbioc_1.6.0
1 2 3 4 5 6 7 8 9 10 11 12 13 *** caught segfault *** address 0x18, cause 'memory not mapped' Traceback: 1: .Call("writer_open", filename) 2: .curlWriterOpen(destfile) 3: .curlWriterDownload(url = url, destfile = tmpFile, opts = opts, curlHandle = curlHandle) 4: doTryCatch(return(expr), name, parentenv, handler) 5: tryCatchOne(expr, names, parentenv, handlers[[1L]]) 6: tryCatchList(expr, classes, parentenv, handlers) 7: tryCatch(.curlWriterDownload(url = url, destfile = tmpFile, opts = opts, curlHandle = curlHandle), error = function(ex) { file.remove(tmpFile) stop(ex)}) 8: synapseDownloadFileToDestination(url = url, checksum = checksum, destfile = destfile, opts = opts) 9: synapseClient:::synapseDownloadFile(url = paste("file://", gsub("[A-Z]:", "", synapseClient:::.getCache("localSourceFil

Environment

OS X Lion, XCode 4.4.1, R 3.0.1,

Status

Assignee

Chris Bare

Reporter

Chris Bare

Labels

None

Validator

Chris Bare

Release Version History

None

Priority

Major