Recursive get (sync) broken for empty folders.
1
2
3
4
5
6
7
8
syn get -r syn11678367
making dir ./Cluster energy features with postural tremor
Downloading [####################]100.00% 1.3MB/1.3MB (734.0kB/s) Postural_tremor.html Done...
making dir ./Cluster energy features with resting tremor
Downloading [####################]100.00% 1.7MB/1.7MB (1.8MB/s) Resting_tremor.html Done...
making dir ./Clustering of most predictive features
The synapse id syn12087406 is not a container (Project/Folder), attempting to get the entity anyways
ValueError: The provided id: syn12087406 is was neither a container nor a File
The logic:
1
2
3
4
5
6
7
8
if zero_results:
#a http error would be raised if the synapse Id was not valid (404) or no permission (403) so at this point the entity should be get-able
stderr.write("The synapse id %s is not a container (Project/Folder), attempting to get the entity anyways" % id)
ent = syn.get(id, downloadLocation=path, ifcollision=ifcollision, followLink=followLink)
if isinstance(ent, File):
allFiles.append(ent)
else:
raise ValueError("The provided id: %s is was neither a container nor a File" % id)
is wrong as zero results will be returned for an empty folder and getting the folder will not compare correctly to a File.
Also why aren't we using synapseutils.walk here instead of replicating the code.
Status
Assignee
Kimyen Truong
Reporter
Larsson Omberg
Validator
Kenneth Daily
Epic Link
Fix versions
Priority
Major