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Synapse Table update: Connection Reset
Description
These are the messages I get when I am updating a Synapse Table. Any ideas as to why I get these messages?
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Line number 736: Connection reset
Line number 736: Connection reset
Line number 736: Connection reset
Line number 736: Connection reset
Line number 736: Connection reset
Line number 736: Connection reset
Line number 736: Connection reset
Line number 736: Connection reset
Line number 736: Connection reset
Line number 736: Connection reset
Line number 736: Connection reset
Line number 736: Connection reset
Line number 736: Connection reset
Line number 736: Connection reset
Line number 736: Connection reset
Line number 736: Connection reset
Line number 736: Connection reset
Line number 736: Connection reset
Line number 736: Connection reset
Line number 736: Connection reset
Line number 736: Connection reset
Line number 736: Connection reset
Line number 736: Connection reset
Line number 736: Connection reset
Line number 736: Connection reset
Line number 736: Connection reset
Line number 736: Connection reset
Line number 736: Connection reset
Line number 736: Connection reset
Line number 736: Connection reset
Line number 736: Connection reset
Line number 736: Connection reset
Line number 736: Connection reset
Line number 736: Connection reset
Line number 736: Connection reset
Line number 736: Connection reset
Line number 736: Connection reset
Line number 736: Connection reset
Line number 736: Connection reset
Line number 736: Connection reset
Line number 736: Connection reset
Line number 736: Connection reset
Line number 736: Connection reset
Line number 736: Connection reset
Line number 736: Connection reset
Line number 736: Connection reset
Line number 736: Connection reset
Line number 736: Connection reset
Line number 736: Connection reset
Line number 736: Connection reset
Line number 736: Connection reset
Line number 736: Connection reset
Line number 736: Connection reset
Line number 736: Connection reset
Line number 736: Connection reset
Line number 736: Connection reset
Line number 736: Connection reset
Line number 736: Connection reset
Line number 736: Connection reset
Line number 736: Connection reset
Line number 736: Connection reset
Welcome, Thomas Yu!
Traceback (most recent call last):
File "MAFinBED.py", line 14, in <module>
processing_functions.updateDatabase(mutations_database, new_mutations, "syn8239811", ['Chromosome','Start_Position','End_Position','Reference_Allele','Tumor_Seq_Allele2','Tumor_Sample_Barcode'])
File "/home/ubuntu/Genie/sage_processing/processing_functions.py", line 222, in updateDatabase
table = syn.store(Table(syn.get(databaseSynId), toUpdate))
File "/home/ubuntu/anaconda2/lib/python2.7/site-packages/synapseclient/client.py", line 939, in store
return obj._synapse_store(self)
File "/home/ubuntu/anaconda2/lib/python2.7/site-packages/synapseclient/table.py", line 1288, in _synapse_store
linesToSkip=self.linesToSkip)
File "/home/ubuntu/anaconda2/lib/python2.7/site-packages/synapseclient/client.py", line 2946, in _uploadCsv
return self._waitForAsync(uri=uri, request=request)
File "/home/ubuntu/anaconda2/lib/python2.7/site-packages/synapseclient/client.py", line 2735, in _waitForAsync
result = self.restGET(uri+'/get/%s'%async_job_id['token'], endpoint=endpoint)
File "/home/ubuntu/anaconda2/lib/python2.7/site-packages/synapseclient/client.py", line 3383, in restGET
exceptions._raise_for_status(response, verbose=self.debug)
File "/home/ubuntu/anaconda2/lib/python2.7/site-packages/synapseclient/exceptions.py", line 140, in _raise_for_status
raise SynapseHTTPError(message, response=response)
synapseclient.exceptions.SynapseHTTPError: 500 Server Error: Internal Server Error
Line number 736: Connection resetEnvironment
None
Status
Assignee
Ziming Dong
Reporter
Thomas Yu
Labels
None
Validator
None
Release Version History
None
Fix versions
Priority
Blocker