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Results - Methylation

Owned by Bruce Hoff
Last updated: Jul 27, 2011Version comment
2 min read

Results for methylation data set  (27k probes and 555 samples)

Sage Coexpression, organic correlation algorithm

Sage Coexpression, WGCNA correlation algorithm

WGCNA Coexpression

Unix space:  180.3 GB

Unix space: 187.1 GB

Unix space:  101.2 GB

Unix time:  24:45:34

Unix time: 19:40:23

Unix time: 5:11:05

(lost  file, due to I/O error)

(lost  file, due to I/O error)


Module difference vs. this baseline (% of pairs for which the algorithm disagrees with this baseline on module co-membership):

 

9.5%

Module co-membership comparison (vs. this column as a baseline):

 

turquoise grey blue green brown yellow black pink red magenta purple
  1      15259  430   47     6   356    261     0    0   0       0      3
  0         32 6553    4     0    62     17     0    0  38       0      6
  2          0  503 1535     0     5      0     0    0  49       0      0
  3          0  556    0     0     0      0    78    0  19      40      0
  5          0   75    0   387     0      0     0    0   0       0      0
  4          0  327  309     0     0      0     0    0   0       0     23
  6          0  109    1     0   194      5     0    0   0       0      0
  7          1   28    0     0     2    115     0    0   0       0      0
  8          0    4    0     0     0      0     0   62   0       0      0
  10         0   38    0     0     0      0     0    0   0       0      0
  9          7    4    0     0     0     28     0    0   0       0      0


<<< Sage dendrogram and modules, with WGCNA modules underneath, for comparison.


WGCNA dendrogram and modules, with Sage modules underneath, for comparison. >>>>